• data
    • filters.mat
    • opt.mat
    • optATGCNN2.mat
    • params.mat
    • stepblocks18x18_16.mat
    • stiffs.mat
  • plotting scripts
    • eigenvalues_variable_lengths.txt
    • eigenvalues_variable_lengths_in_%.txt
    • figures_to_explain_truncation.txt
    • gen_eigenvalues_to_compare_truncations.txt
    • last_20_eigenvectors_from_S.txt
    • last_52_stretch-stagger-tilt-rise.txt
    • lines_at_transitions.txt
    • mean_stiffness_vs_truncations.txt
    • mstiff_mopt_msum_msumopt.txt
    • plot_all_eigenvalues.txt
    • save_all_kplots.txt
    • save_all_qplots.txt
    • save_all_qqplots.txt
    • save_all_splots.txt
    • save_all_splots_ends-abs.txt
    • save_endeffects.txt
    • save_splots_truncations.txt
    • saves_delends.txt
    • splot_of_means.txt
    • splots_full_53tr_53opt.txt
    • splots_variable_lengths.txt
  • BStiffplot2.m
  • change_scaling.m
  • choltest.m
  • comparison_full_53_opt.txt
  • constructStiffHom.m
  • correct.m
  • create_and_save_all_Q_matrices.txt
  • delends.m
  • detect_end_eigenvectors_of_sparse_stiffnesses.txt
  • dispersion.m
  • eigvals_at_transitions.txt
  • endeffects.m
  • extract_opt.m
  • extract_sc.m
  • extract_w.m
  • find_shift.m
  • find_trans.m
  • frequencies.m
  • klsnorm.m
  • length.txt
  • meanstiff.m
  • parseArgs.m
  • pca18.m
  • pca39.m
  • pca_on_q.m
  • pca_on_stiffs.m
  • ploteig.m
  • plotsteps3mer.m
  • project.m
  • q.m
  • q2.m
  • qplot.m
  • qqplot.m
  • reorder.m
  • rescale.m
  • screen2png.m
  • sorteig.m
  • stepblocks18x18_16.mat
  • subaxis.m
  • summaries.m
  • summary.m
  • summary2.m
  • tol005.m
  • unicolor.m