Shapes (ŵ)

Plots of shape parameters for the sequences 1-56 from the training data set. Each figure contains four panels. The two panels on the left are plots of intra base pair parameters and the two panels on the right are plots of inter base pair (junction) parameters. Rotational parameters are plotted in the top panels and translational parameters are in the bottom panels. Sequences are indicated on the abscissa of each plot.

For better visualization parameter values are interpolated by piecewice-linear curves, where solid lines correspond to the parameters estimated directly from the MD data and dashed lines correspond to the parameters reconstructed from our dimer dependent parameter set. Note that even though the parameter set is dimer dependent, due to the phenomeneon of frustration, shapes have a non-local sequence dependence.

S1_shapes.png S29_shapes.png
S2_shapes.png S30_shapes.png
S3_shapes.png S31_shapes.png
S4_shapes.png S32_shapes.png
S5_shapes.png S33_shapes.png
S6_shapes.png S34_shapes.png
S7_shapes.png S35_shapes.png
S8_shapes.png S36_shapes.png
S9_shapes.png S37_shapes.png
S10_shapes.png S38_shapes.png
S11_shapes.png S39_shapes.png
S12_shapes.png S40_shapes.png
S13_shapes.png S41_shapes.png
S14_shapes.png S42_shapes.png
S15_shapes.png S43_shapes.png
S16_shapes.png S44_shapes.png
S17_shapes.png S45_shapes.png
S18_shapes.png S46_shapes.png
S19_shapes.png S47_shapes.png
S20_shapes.png S48_shapes.png
S21_shapes.png S49_shapes.png
S22_shapes.png S50_shapes.png
S23_shapes.png S51_shapes.png
S24_shapes.png S52_shapes.png
S25_shapes.png S53_shapes.png
S26_shapes.png S54_shapes.png
S27_shapes.png S55_shapes.png
S28_shapes.png S56_shapes.png