Weighted shapes (σ = Kŵ)

Plots of weighted shape parameters (σ = Kŵ) for the sequences 1-56 from the training data set. Each figure contains four panels. The two panels on the left are plots of the intra base pair parameter diagonal couplings and the two panels on the right are plots of inter base pair (junction) parameter diagonal couplings. Rotational parameters are plotted in the top panels and translational parameters are in the bottom panels. Sequences are indicated on the abscissa of each plot.

For better visualization parameter values are interpolated by piecewice-linear curves, where solid lines correspond to the nearest-neighbour parameters estimated from the MD data, dashed-dotted lines correspond to the parameters, computed using a reconstructed stiffness matrix, and dashed lines correspond to the parameters reconstructed from our dimer dependent parameter set.

S1_weighted_shapes.png S29_weighted_shapes.png
S2_weighted_shapes.png S30_weighted_shapes.png
S3_weighted_shapes.png S31_weighted_shapes.png
S4_weighted_shapes.png S32_weighted_shapes.png
S5_weighted_shapes.png S33_weighted_shapes.png
S6_weighted_shapes.png S34_weighted_shapes.png
S7_weighted_shapes.png S35_weighted_shapes.png
S8_weighted_shapes.png S36_weighted_shapes.png
S9_weighted_shapes.png S37_weighted_shapes.png
S10_weighted_shapes.png S38_weighted_shapes.png
S11_weighted_shapes.png S39_weighted_shapes.png
S12_weighted_shapes.png S40_weighted_shapes.png
S13_weighted_shapes.png S41_weighted_shapes.png
S14_weighted_shapes.png S42_weighted_shapes.png
S15_weighted_shapes.png S43_weighted_shapes.png
S16_weighted_shapes.png S44_weighted_shapes.png
S17_weighted_shapes.png S45_weighted_shapes.png
S18_weighted_shapes.png S46_weighted_shapes.png
S19_weighted_shapes.png S47_weighted_shapes.png
S20_weighted_shapes.png S48_weighted_shapes.png
S21_weighted_shapes.png S49_weighted_shapes.png
S22_weighted_shapes.png S50_weighted_shapes.png
S23_weighted_shapes.png S51_weighted_shapes.png
S24_weighted_shapes.png S52_weighted_shapes.png
S25_weighted_shapes.png S53_weighted_shapes.png
S26_weighted_shapes.png S54_weighted_shapes.png
S27_weighted_shapes.png S55_weighted_shapes.png
S28_weighted_shapes.png S56_weighted_shapes.png