Weighted shapes (σ = Kŵ)
Plots of weighted shape parameters (σ = Kŵ) for the sequences 1-56 from the training data set. Each figure contains four panels. The two panels on the left are plots of the intra base pair parameter diagonal couplings and the two panels on the right are plots of inter base pair (junction) parameter diagonal couplings. Rotational parameters are plotted in the top panels and translational parameters are in the bottom panels. Sequences are indicated on the abscissa of each plot.
For better visualization parameter values are interpolated by piecewice-linear curves, where solid lines correspond to the nearest-neighbour parameters estimated from the MD data, dashed-dotted lines correspond to the parameters, computed using a reconstructed stiffness matrix, and dashed lines correspond to the parameters reconstructed from our dimer dependent parameter set.
