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Output data

NCC cgDNAmin:
Kahn & Crothers
Poly A

PC cgDNAmin:
Kahn & Crothers
Poly A

NCC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

PC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

Other
Scripts
Sequences

NCC cgDNA+min: Kahn & Crothers sequence

Non-continuous closure cgDNA+min results for the 4 initial guesses highlighted in the following bifurcation diagram:

From the results we observe that solutions for guesses A and D show the same configuration and solutions given by guesses B and C are the same.

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Solution for initial guess A:

	Link	Energy	Smallest Eigenvalue
Initial guess A	15	4015	-
Solution A	15	46	3.57e-6

MATLAB figures saved variables:
Kahn-Crothers_3Dsol1_NCCcgDNA+min.fig
Kahn-Crothers_2Dsol1_NCCcgDNA+min_cgDNA-coord.fig
Kahn-Crothers_2Dsol1_NCCcgDNA+min_Pho-coord.fig
Kahn-Crothers_sol1_NCCcgDNA+min.mat

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Solution for initial guess B:

	Link	Energy	Smallest Eigenvalue
Initial guess B	14	4970	-
Solution B	16	110	2.46e-6

MATLAB figures and saved variables:
Kahn-Crothers_3Dsol2_NCCcgDNA+min.fig
Kahn-Crothers_2Dsol2_NCCcgDNA+min_cgDNA-coord.fig
Kahn-Crothers_2Dsol2_NCCcgDNA+min_Pho-coord.fig
Kahn-Crothers_sol2_NCCcgDNA+min.mat

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Solution for initial guess C:

	Link	Energy	Smallest Eigenvalue
Initial guess C	14	5051	-
Solution C	16	110	2.58e-6

MATLAB figures and saved variables:
Kahn-Crothers_3Dsol4_NCCcgDNA+min.fig
Kahn-Crothers_2Dsol4_NCCcgDNA+min_cgDNA-coord.fig
Kahn-Crothers_2Dsol4_NCCcgDNA+min_Pho-coord.fig
Kahn-Crothers_sol4_NCCcgDNA+min.mat

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Solution for initial guess D:

	Link	Energy	Smallest Eigenvalue
Initial guess D	15	7094	-
Solution D	15	46	3.63e-6

MATLAB figures and saved variables:
Kahn-Crothers_3Dsol10_NCCcgDNA+min.fig
Kahn-Crothers_2Dsol10_NCCcgDNA+min_cgDNA-coord.fig
Kahn-Crothers_2Dsol10_NCCcgDNA+min_Pho-coord.fig
Kahn-Crothers_sol10_NCCcgDNA+min.mat