PC cgDNA+min: Pyne et al. 251 bp sequence

Periodic closure cgDNA+min results for the 4 initial guesses highlighted in the following bifurcation diagram:

After investigation, one can find that solutions for initial guesses B and D are the same configuration. Solutions given by guesses A and C are boh different.

Solution for initial guess A:

	Link	Energy	Smallest Eigenvalue
Initial guess A	23	7321	-
Solution A	25	79	1.39e-7

MATLAB figures and saved variables:
Noy_251_3Dsol1_PCcgDNA+min.fig
Noy_251_2Dsol1_PCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol1_PCcgDNA+min_Pho-coord.fig
Noy_251_sol1_PCcgDNA+min.mat

Solution for initial guess B:

	Link	Energy	Smallest Eigenvalue
Initial guess B	24	7100	-
Solution B	24	32	5.37e-7

MATLAB figures and saved variables:
Noy_251_3Dsol2_PCcgDNA+min.fig
Noy_251_2Dsol2_PCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol2_PCcgDNA+min_Pho-coord.fig
Noy_251_sol2_PCcgDNA+min.mat

Solution for initial guess C:

	Link	Energy	Smallest Eigenvalue
Initial guess C	22	8864	-
Solution C	24	35	7.92e-7

MATLAB figures and saved variables:
Noy_251_3Dsol3_PCcgDNA+min.fig
Noy_251_2Dsol3_PCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol3_PCcgDNA+min_Pho-coord.fig
Noy_251_sol3_PCcgDNA+min.mat

Solution for initial guess D:

	Link	Energy	Smallest Eigenvalue
Initial guess D	24	7907	-
Solution D	24	33	1.52e-7

MATLAB figures and saved variables:
Noy_251_3Dsol4_PCcgDNA+min.fig
Noy_251_2Dsol4_PCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol4_PCcgDNA+min_Pho-coord.fig
Noy_251_sol4_PCcgDNA+min.mat

Output data

PC cgDNA+min: Pyne et al. 251 bp sequence

Solution for initial guess A:

Solution for initial guess B:

Solution for initial guess C:

Solution for initial guess D: