NCC cgDNA+min: Poly A sequence

Non-continuous closure cgDNA+min results for the 4 initial guesses highlighted in the following bifurcation diagram:

From the results we observe that solutions for guesses A and D show the same configuration and solutions given by guesses B and C are the same.

Solution for initial guess A:

Link Energy Smallest Eigenvalue
Initial guess A 15 601 -
Solution A 15 72 5.57e-7





MATLAB figures and saved variables:
PolyA_3Dsol1_NCCcgDNA+min.fig
PolyA_2Dsol1_NCCcgDNA+min_cgDNA-coord.fig
PolyA_2Dsol1_NCCcgDNA+min_Pho-coord.fig
PolyA_sol1_NCCcgDNA+min.mat

Solution for initial guess B:

Link Energy Smallest Eigenvalue
Initial guess B 14 2003 -
Solution B 16 112 8.84e-7





MATLAB figures and saved variables:
PolyA_3Dsol2_NCCcgDNA+min.fig
PolyA_2Dsol2_NCCcgDNA+min_cgDNA-coord.fig
PolyA_2Dsol2_NCCcgDNA+min_Pho-coord.fig
PolyA_sol2_NCCcgDNA+min.mat

Solution for initial guess C:

Link Energy Smallest Eigenvalue
Initial guess C 16 1427 -
Solution C 16 112 9.15e-7





MATLAB figures and saved variables:
PolyA_3Dsol3_NCCcgDNA+min.fig
PolyA_2Dsol3_NCCcgDNA+min_cgDNA-coord.fig
PolyA_2Dsol3_NCCcgDNA+min_Pho-coord.fig
PolyA_sol3_NCCcgDNA+min.mat

Solution for initial guess D:

Link Energy Smallest Eigenvalue
Initial guess D 17 4220 -
Solution D 15 72 5.72e-7





MATLAB figures and saved variables:
PolyA_3Dsol4_NCCcgDNA+min.fig
PolyA_2Dsol4_NCCcgDNA+min_cgDNA-coord.fig
PolyA_2Dsol4_NCCcgDNA+min_Pho-coord.fig
PolyA_sol4_NCCcgDNA+min.mat