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Output data

NCC cgDNAmin:
Kahn & Crothers
Poly A

PC cgDNAmin:
Kahn & Crothers
Poly A

NCC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

PC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

Other
Scripts
Sequences

PC cgDNAmin: Poly A sequence

Periodic closure cgDNAmin results for the 4 initial guesses highlighted in the following bifurcation diagram:

We observe that all solutions are different.

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Solution for initial guess A:

	Link	Energy	Smallest Eigenvalue
Initial guess A	15	128	-
Solution A	15	60	1.17e-8

MATLAB figures and saved variables:
PolyA_3Dsol1_PCcgDNAmin.fig
PolyA_2Dsol1_PCcgDNAmin.fig
PolyA_sol1_PCcgDNAmin.mat

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Solution for initial guess B:

	Link	Energy	Smallest Eigenvalue
Initial guess B	14	209	-
Solution B	14	142	4.32e-8

MATLAB figures and saved variables:
PolyA_3Dsol2_PCcgDNAmin.fig
PolyA_2Dsol2_PCcgDNAmin.fig
PolyA_sol2_PCcgDNAmin.mat

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Solution for initial guess C:

	Link	Energy	Smallest Eigenvalue
Initial guess C	16	314	-
Solution C	16	61	2.65e-8

MATLAB figures and saved variables:
PolyA_3Dsol3_PCcgDNAmin.fig
PolyA_2Dsol3_PCcgDNAmin.fig
PolyA_sol3_PCcgDNAmin.mat

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Solution for initial guess D:

	Link	Energy	Smallest Eigenvalue
Initial guess D	17	217	-
Solution D	17	147	7.46e-8

MATLAB figures and saved variables:
PolyA_3Dsol4_PCcgDNAmin.fig
PolyA_2Dsol4_PCcgDNAmin.fig
PolyA_sol4_PCcgDNAmin.mat