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Output data

NCC cgDNAmin:
Kahn & Crothers
Poly A

PC cgDNAmin:
Kahn & Crothers
Poly A

NCC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

PC cgDNA+min:
Kahn & Crothers
Poly A
Pyne 251 bp
Pyne 339 bp
Widom 601

Other
Scripts
Sequences

NCC cgDNA+min: Pyne et al. 251 bp sequence

Non-continuous closure cgDNA+min results for the 4 initial guesses highlighted in the following bifurcation diagram:

We observe that guesses B, C and D yield the same configuration while A is different.

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Solution for initial guess A:

	Link	Energy	Smallest Eigenvalue
Initial guess A	23	7356	-
Solution A	23	77	2.14e-7

MATLAB figures and saved variables:
Noy_251_3Dsol1_NCCcgDNA+min.fig
Noy_251_2Dsol1_NCCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol1_NCCcgDNA+min_Pho-coord.fig
Noy_251_sol1_NCCcgDNA+min.mat

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Solution for initial guess B:

	Link	Energy	Smallest Eigenvalue
Initial guess B	24	7131	-
Solution B	24	33	2.87e-7

MATLAB figures and saved variables:
Noy_251_3Dsol2_NCCcgDNA+min.fig
Noy_251_2Dsol2_NCCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol2_NCCcgDNA+min_Pho-coord.fig
Noy_251_sol2_NCCcgDNA+min.mat

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Solution for initial guess C:

	Link	Energy	Smallest Eigenvalue
Initial guess C	22	8900	-
Solution C	24	33	2.63e-7

MATLAB figures and saved variables:
Noy_251_3Dsol3_NCCcgDNA+min.fig
Noy_251_2Dsol3_NCCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol3_NCCcgDNA+min_Pho-coord.fig
Noy_251_sol3_NCCcgDNA+min.mat

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Solution for initial guess D:

	Link	Energy	Smallest Eigenvalue
Initial guess D	24	7941	-
Solution D	24	33	2.87e-7

MATLAB figures and saved variables:
Noy_251_3Dsol4_NCCcgDNA+min.fig
Noy_251_2Dsol4_NCCcgDNA+min_cgDNA-coord.fig
Noy_251_2Dsol4_NCCcgDNA+min_Pho-coord.fig
Noy_251_sol4_NCCcgDNA+min.mat