NCC cgDNA+min: Pyne et al. 339 bp sequence

Non-continuous closure cgDNA+min results for the 4 initial guesses highlighted in the following bifurcation diagram:

Solutions for initial guesses B and C both represent the same configuration.

Solution for initial guess A:

Link Energy Smallest Eigenvalue
Initial guess A 31 9867 -
Solution A 33 31 8.16e-8





MATLAB figures and saved variables:
Noy_339_3Dsol1_NCCcgDNA+min.fig
Noy_339_2Dsol1_NCCcgDNA+min_cgDNA-coord.fig
Noy_339_2Dsol1_NCCcgDNA+min_Pho-coord.fig
Noy_339_sol1_NCCcgDNA+min.mat

Solution for initial guess B:

Link Energy Smallest Eigenvalue
Initial guess B 31 10361 -
Solution B 32 40.5 1.09e-7





MATLAB figures and saved variables:
Noy_339_3Dsol3_NCCcgDNA+min.fig
Noy_339_2Dsol3_NCCcgDNA+min_cgDNA-coord.fig
Noy_339_2Dsol3_NCCcgDNA+min_Pho-coord.fig
Noy_339_sol3_NCCcgDNA+min.mat

Solution for initial guess C:

Link Energy Smallest Eigenvalue
Initial guess C 34 10654 -
Solution C 32 40.5 9.09e-8





MATLAB figures and saved variables:
Noy_339_3Dsol6_NCCcgDNA+min.fig
Noy_339_2Dsol6_NCCcgDNA+min_cgDNA-coord.fig
Noy_339_2Dsol6_NCCcgDNA+min_Pho-coord.fig
Noy_339_sol6_NCCcgDNA+min.mat

Solution for initial guess D:

Link Energy Smallest Eigenvalue
Initial guess D Too hard to count,
31 from Bifuraction diagram 		40691 -
Solution D Too hard to count 955 5.39e-5





MATLAB figures and saved variables:
Noy_339_3Dsol9_NCCcgDNA+min.fig
Noy_339_2Dsol9_NCCcgDNA+min_cgDNA-coord.fig
Noy_339_2Dsol9_NCCcgDNA+min_Pho-coord.fig
Noy_339_sol9_NCCcgDNA+min.mat